IL_8K2D_217

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_217 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.1267

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8K2D|1|C2|C|1495
8K2D|1|C2|U|1496
8K2D|1|C2|U|1497
8K2D|1|C2|G|1498
*
8K2D|1|C2|C|1509
8K2D|1|C2|U|1510
8K2D|1|C2|U|1511
8K2D|1|C2|G|1512

Current chains

Chain C2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS19A