3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCG*CAAG
Length
7 nucleotides
Bulged bases
8K2D|1|C2|C|1637, 8K2D|1|C2|A|1766
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8K2D_219 not in the Motif Atlas
Geometric match to IL_5J7L_058
Geometric discrepancy: 0.1489
The information below is about IL_5J7L_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

8K2D|1|C2|C|1636
8K2D|1|C2|C|1637
8K2D|1|C2|G|1638
*
8K2D|1|C2|C|1764
8K2D|1|C2|A|1765
8K2D|1|C2|A|1766
8K2D|1|C2|G|1767

Current chains

Chain C2
18S rRNA

Nearby chains

Chain CS
Suppressor protein STM1
Chain Sa
Small ribosomal subunit protein eS26B

Coloring options:


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