IL_8K2D_219

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8K2D|1|C2|C|1637, 8K2D|1|C2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_219 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1489

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8K2D|1|C2|C|1636
8K2D|1|C2|C|1637
8K2D|1|C2|G|1638
*
8K2D|1|C2|C|1764
8K2D|1|C2|A|1765
8K2D|1|C2|A|1766
8K2D|1|C2|G|1767

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CS

Suppressor protein STM1

Chain Sa

Small ribosomal subunit protein eS26B