IL_8K2D_227
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_227 not in the Motif Atlas
- Geometric match to IL_4V88_471
- Geometric discrepancy: 0.1138
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8K2D|1|C2|U|1669
8K2D|1|C2|G|1670
8K2D|1|C2|A|1671
8K2D|1|C2|G|1672
*
8K2D|1|C2|C|1729
8K2D|1|C2|A|1730
8K2D|1|C2|A|1731
8K2D|1|C2|A|1732
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LW
- Large ribosomal subunit protein eL24A
- Chain SG
- 40S ribosomal protein S6-A
- Chain SI
- 40S ribosomal protein S8-A
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