3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUCA*UUUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8K2D_229 not in the Motif Atlas
Geometric match to IL_4V88_473
Geometric discrepancy: 0.1312
The information below is about IL_4V88_473
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

8K2D|1|C2|C|1675
8K2D|1|C2|U|1676
8K2D|1|C2|C|1677
8K2D|1|C2|A|1678
*
8K2D|1|C2|U|1723
8K2D|1|C2|U|1724
8K2D|1|C2|U|1725
8K2D|1|C2|G|1726

Current chains

Chain C2
18S rRNA

Nearby chains

Chain LW
Large ribosomal subunit protein eL24A
Chain SG
40S ribosomal protein S6-A
Chain SI
40S ribosomal protein S8-A

Coloring options:


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