IL_8K2D_229
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCA*UUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_229 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.1312
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
8K2D|1|C2|C|1675
8K2D|1|C2|U|1676
8K2D|1|C2|C|1677
8K2D|1|C2|A|1678
*
8K2D|1|C2|U|1723
8K2D|1|C2|U|1724
8K2D|1|C2|U|1725
8K2D|1|C2|G|1726
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain LW
- Large ribosomal subunit protein eL24A
- Chain SG
- 40S ribosomal protein S6-A
- Chain SI
- 40S ribosomal protein S8-A
Coloring options: