IL_8K2D_232
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_232 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0715
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C3|A|44
8K2D|1|C3|C|45
8K2D|1|C3|G|46
8K2D|1|C3|C|47
8K2D|1|C3|A|48
8K2D|1|C3|G|49
8K2D|1|C3|C|50
8K2D|1|C3|G|51
8K2D|1|C3|A|52
8K2D|1|C3|A|53
8K2D|1|C3|A|54
8K2D|1|C3|U|55
8K2D|1|C3|G|56
8K2D|1|C3|C|57
8K2D|1|C3|G|58
8K2D|1|C3|A|59
8K2D|1|C3|U|60
8K2D|1|C3|A|61
8K2D|1|C3|C|62
8K2D|1|C3|G|63
8K2D|1|C3|U|64
*
8K2D|1|C3|A|96
8K2D|1|C3|A|97
8K2D|1|C3|U|98
8K2D|1|C3|C|99
8K2D|1|C3|U|100
Current chains
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lh
- Large ribosomal subunit protein uL29A
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Ll
- Large ribosomal subunit protein eL39
Coloring options: