IL_8K2D_237

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GUAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_237 not in the Motif Atlas

Geometric match to IL_5TBW_374

Geometric discrepancy: 0.1582

The information below is about IL_5TBW_374

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.2

Basepair signature

cWW-cWW-cWW-R

Number of instances in this motif group

8

Unit IDs

8K2D|1|C4|C|28
8K2D|1|C4|C|29
*
8K2D|1|C4|G|49
8K2D|1|C4|U|50
8K2D|1|C4|A|51
8K2D|1|C4|G|52

Current chains

Chain C4

5S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LJ

Large ribosomal subunit protein uL5A