IL_8K2D_251
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 8K2D|1|C2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_251 not in the Motif Atlas
- Homologous match to IL_8P9A_422
- Geometric discrepancy: 0.202
- The information below is about IL_8P9A_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57741.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8K2D|1|C2|U|893
8K2D|1|C2|U|894
8K2D|1|C2|G|895
8K2D|1|C2|U|896
8K2D|1|C2|C|897
8K2D|1|C2|A|898
8K2D|1|C2|G|899
*
8K2D|1|C2|C|910
8K2D|1|C2|U|911
8K2D|1|C2|U|912
8K2D|1|C2|G|913
8K2D|1|C2|G|914
8K2D|1|C2|A|915
8K2D|1|C2|U|916
8K2D|1|C2|U|917
8K2D|1|C2|U|918
8K2D|1|C2|A|919
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain SB
- 40S ribosomal protein S1-A
- Chain SO
- 40S ribosomal protein S14-A
Coloring options: