IL_8K2D_254

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_254 not in the Motif Atlas

Homologous match to IL_8C3A_507

Geometric discrepancy: 0.1026

The information below is about IL_8C3A_507

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.1

Basepair signature

cWW-tSH-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8K2D|1|C2|G|1540
8K2D|1|C2|G|1541
8K2D|1|C2|G|1542
8K2D|1|C2|A|1543
8K2D|1|C2|U|1544
8K2D|1|C2|A|1545
*
8K2D|1|C2|U|1566
8K2D|1|C2|U|1567
8K2D|1|C2|C|1568
8K2D|1|C2|A|1569
8K2D|1|C2|A|1570
8K2D|1|C2|C|1571

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein uS13A

Chain ST

Small ribosomal subunit protein eS19A