IL_8K3O_029
3D structure
- PDB id
- 8K3O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 8K3O|1|A|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K3O_029 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.1477
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8K3O|1|A|U|605
8K3O|1|A|G|606
8K3O|1|A|A|607
8K3O|1|A|A|608
8K3O|1|A|A|609
8K3O|1|A|U|610
8K3O|1|A|C|611
8K3O|1|A|C|612
*
8K3O|1|A|G|628
8K3O|1|A|A|629
8K3O|1|A|A|630
8K3O|1|A|C|631
8K3O|1|A|U|632
8K3O|1|A|G|633
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain H
- 30S ribosomal protein S8
- Chain P
- 30S ribosomal protein S16
- Chain Q
- 30S ribosomal protein S17
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