IL_8K4E_036

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8K4E|1|A|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K4E_036 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.2706

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8K4E|1|A|U|684
8K4E|1|A|G|685
8K4E|1|A|U|686
8K4E|1|A|A|687
8K4E|1|A|G|688
*
8K4E|1|A|C|699
8K4E|1|A|G|700
8K4E|1|A|U|701
8K4E|1|A|A|702
8K4E|1|A|G|703
8K4E|1|A|A|704
8K4E|1|A|G|705
8K4E|1|A|A|706

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11