IL_8K82_020

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8K82|1|C1|U|534, 8K82|1|C1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_020 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1108

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8K82|1|C1|G|531
8K82|1|C1|A|532
8K82|1|C1|A|533
8K82|1|C1|U|534
8K82|1|C1|G|535
8K82|1|C1|U|536
8K82|1|C1|A|537
8K82|1|C1|G|538
*
8K82|1|C1|U|553
8K82|1|C1|A|554
8K82|1|C1|U|555
8K82|1|C1|U|556
8K82|1|C1|A|557
8K82|1|C1|U|558
8K82|1|C1|A|559
8K82|1|C1|G|560
8K82|1|C1|C|561

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LM

Large ribosomal subunit protein eL14A

Chain LS

Large ribosomal subunit protein eL20A