IL_8K82_069
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGAAU*AGGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_069 not in the Motif Atlas
- Homologous match to IL_8C3A_073
- Geometric discrepancy: 0.1037
- The information below is about IL_8C3A_073
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8K82|1|C1|U|1645
8K82|1|C1|G|1646
8K82|1|C1|A|1647
8K82|1|C1|A|1648
8K82|1|C1|U|1649
*
8K82|1|C1|A|1806
8K82|1|C1|G|1807
8K82|1|C1|G|1808
8K82|1|C1|A|1809
8K82|1|C1|A|1810
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain L2
- Large ribosomal subunit protein eL41A
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LZ
- Large ribosomal subunit protein eL27A
- Chain Lg
- Large ribosomal subunit protein eL34A
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