IL_8K82_122
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_122 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.105
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8K82|1|C1|C|3018
8K82|1|C1|U|3019
8K82|1|C1|U|3020
8K82|1|C1|A|3021
8K82|1|C1|G|3022
8K82|1|C1|U|3023
8K82|1|C1|A|3024
8K82|1|C1|C|3025
*
8K82|1|C1|G|3030
8K82|1|C1|G|3031
8K82|1|C1|A|3032
8K82|1|C1|A|3033
8K82|1|C1|C|3034
8K82|1|C1|A|3035
8K82|1|C1|G|3036
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LH
- Large ribosomal subunit protein uL6A
- Chain LV
- Large ribosomal subunit protein uL14A
- Chain Lm
- Ubiquitin-ribosomal protein eL40A fusion protein
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