IL_8K82_138

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8K82|1|C1|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_138 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.0715

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8K82|1|C1|G|3328
8K82|1|C1|U|3329
8K82|1|C1|A|3330
*
8K82|1|C1|U|3373
8K82|1|C1|U|3374
8K82|1|C1|A|3375
8K82|1|C1|A|3376
8K82|1|C1|G|3377
8K82|1|C1|C|3378

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LW

Large ribosomal subunit protein eL24A

Chain Ld

Large ribosomal subunit protein eL31A