IL_8K82_192
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8K82|1|C2|G|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_192 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.1031
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8K82|1|C2|C|874
8K82|1|C2|G|875
8K82|1|C2|G|876
8K82|1|C2|G|877
8K82|1|C2|G|878
*
8K82|1|C2|C|950
8K82|1|C2|A|951
8K82|1|C2|A|952
8K82|1|C2|G|953
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain Lc
- Large ribosomal subunit protein eL30
- Chain SB
- 40S ribosomal protein S1-A
- Chain SN
- 40S ribosomal protein S13
- Chain Sa
- Small ribosomal subunit protein eS26B
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