IL_8K82_201

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_201 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.0794

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8K82|1|C2|G|1111
8K82|1|C2|G|1112
8K82|1|C2|A|1113
8K82|1|C2|G|1114
8K82|1|C2|U|1115
8K82|1|C2|A|1116
8K82|1|C2|U|1117
8K82|1|C2|G|1118
*
8K82|1|C2|U|1129
8K82|1|C2|G|1130
8K82|1|C2|A|1131
8K82|1|C2|A|1132
8K82|1|C2|A|1133
8K82|1|C2|C|1134

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

Large ribosomal subunit protein eL41A

Chain SX

40S ribosomal protein S23-A