3D structure

PDB id
8KIE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of YchF with 50S ribosomal subunit (local map)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8KIE_002 not in the Motif Atlas
Homologous match to IL_5J7L_300
Geometric discrepancy: 0.0779
The information below is about IL_5J7L_300
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_38862.4
Basepair signature
cWW-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8KIE|1|a|U|1595
8KIE|1|a|G|1596
8KIE|1|a|U|1597
8KIE|1|a|A|1598
8KIE|1|a|G|1599
*
8KIE|1|a|U|1634
8KIE|1|a|G|1635
8KIE|1|a|A|1636
8KIE|1|a|G|1637
8KIE|1|a|G|1638

Current chains

Chain a
23S rRNA (partial)

Nearby chains

No other chains within 10Å

Coloring options:


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