IL_8KIE_002
3D structure
- PDB id
- 8KIE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of YchF with 50S ribosomal subunit (local map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8KIE_002 not in the Motif Atlas
- Homologous match to IL_5J7L_300
- Geometric discrepancy: 0.0779
- The information below is about IL_5J7L_300
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8KIE|1|a|U|1595
8KIE|1|a|G|1596
8KIE|1|a|U|1597
8KIE|1|a|A|1598
8KIE|1|a|G|1599
*
8KIE|1|a|U|1634
8KIE|1|a|G|1635
8KIE|1|a|A|1636
8KIE|1|a|G|1637
8KIE|1|a|G|1638
Current chains
- Chain a
- 23S rRNA (partial)
Nearby chains
No other chains within 10ÅColoring options: