IL_8KIE_008
3D structure
- PDB id
- 8KIE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of YchF with 50S ribosomal subunit (local map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGAGG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8KIE_008 not in the Motif Atlas
- Homologous match to IL_5J7L_310
- Geometric discrepancy: 0.105
- The information below is about IL_5J7L_310
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8KIE|1|a|U|1841
8KIE|1|a|G|1842
8KIE|1|a|A|1843
8KIE|1|a|G|1844
8KIE|1|a|G|1845
*
8KIE|1|a|U|1857
8KIE|1|a|G|1858
8KIE|1|a|G|1859
8KIE|1|a|A|1860
8KIE|1|a|G|1861
Current chains
- Chain a
- 23S rRNA (partial)
Nearby chains
No other chains within 10ÅColoring options: