IL_8KIE_009

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8KIE|1|a|C|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KIE_009 not in the Motif Atlas

Homologous match to IL_5J7L_311

Geometric discrepancy: 0.1818

The information below is about IL_5J7L_311

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8KIE|1|a|C|1848
8KIE|1|a|C|1849
*
8KIE|1|a|G|1852
8KIE|1|a|C|1853
8KIE|1|a|G|1854

Current chains

Chain a

23S rRNA (partial)

Nearby chains