IL_8KIE_017

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KIE_017 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0512

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8KIE|1|a|G|1787
8KIE|1|a|G|1788
8KIE|1|a|A|1789
8KIE|1|a|A|1790
8KIE|1|a|C|1791
8KIE|1|a|U|1792
8KIE|1|a|A|1793
8KIE|1|a|G|1794
8KIE|1|a|G|1795
*
8KIE|1|a|C|2111
8KIE|1|a|U|2112
8KIE|1|a|G|2113
8KIE|1|a|U|2114
8KIE|1|a|C|2115

Current chains

Chain a

23S rRNA (partial)

Nearby chains

Chain j

50S ribosomal protein L14