IL_8OEQ_064
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_064 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.0437
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8OEQ|1|1|G|1440
8OEQ|1|1|U|1441
8OEQ|1|1|A|1442
8OEQ|1|1|G|1443
8OEQ|1|1|U|1444
8OEQ|1|1|A|1445
8OEQ|1|1|G|1446
*
8OEQ|1|1|C|2332
8OEQ|1|1|G|2333
8OEQ|1|1|A|2334
8OEQ|1|1|A|2335
8OEQ|1|1|A|2336
8OEQ|1|1|C|2337
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l
- 60S ribosomal protein L4-B
- Chain x
- Ribosomal protein L22
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