IL_8OEQ_065

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8OEQ|1|1|G|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_065 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.061

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

8OEQ|1|1|U|1497
8OEQ|1|1|C|1498
8OEQ|1|1|A|1499
8OEQ|1|1|A|1500
8OEQ|1|1|C|1501
*
8OEQ|1|1|G|1509
8OEQ|1|1|G|1510
8OEQ|1|1|A|1511

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L39

Chain x

Ribosomal protein L22

Chain z

60S ribosomal protein L19-A