IL_8OEQ_104
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGAG*CGCCGGUGAAAUACCAC
- Length
- 22 nucleotides
- Bulged bases
- 8OEQ|1|1|G|2459, 8OEQ|1|1|U|2465, 8OEQ|1|1|C|2468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_104 not in the Motif Atlas
- Homologous match to IL_8C3A_105
- Geometric discrepancy: 0.0436
- The information below is about IL_8C3A_105
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_58809.1
- Basepair signature
- cWW-tSS-L-R-L-R-L-R-L-cWW-L-L-R-L-R-L-L-R
- Number of instances in this motif group
- 1
Unit IDs
8OEQ|1|1|G|2443
8OEQ|1|1|G|2444
8OEQ|1|1|G|2445
8OEQ|1|1|A|2446
8OEQ|1|1|G|2447
*
8OEQ|1|1|C|2454
8OEQ|1|1|G|2455
8OEQ|1|1|C|2456
8OEQ|1|1|C|2457
8OEQ|1|1|G|2458
8OEQ|1|1|G|2459
8OEQ|1|1|U|2460
8OEQ|1|1|G|2461
8OEQ|1|1|A|2462
8OEQ|1|1|A|2463
8OEQ|1|1|A|2464
8OEQ|1|1|U|2465
8OEQ|1|1|A|2466
8OEQ|1|1|C|2467
8OEQ|1|1|C|2468
8OEQ|1|1|A|2469
8OEQ|1|1|C|2470
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain l1
- Ribosomal protein
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