IL_8OEQ_122
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 8OEQ|1|1|A|3114, 8OEQ|1|1|C|3115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_122 not in the Motif Atlas
- Homologous match to IL_8C3A_123
- Geometric discrepancy: 0.0334
- The information below is about IL_8C3A_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8OEQ|1|1|C|2976
8OEQ|1|1|A|2977
8OEQ|1|1|A|2978
8OEQ|1|1|U|2979
*
8OEQ|1|1|A|3111
8OEQ|1|1|G|3112
8OEQ|1|1|A|3113
8OEQ|1|1|A|3114
8OEQ|1|1|C|3115
8OEQ|1|1|G|3116
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain k
- 60S ribosomal protein L3
- Chain w
- Ribosomal protein L13
- Chain x
- Ribosomal protein L22
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