IL_8OEQ_131
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGGA
- Length
- 17 nucleotides
- Bulged bases
- 8OEQ|1|1|A|3150, 8OEQ|1|1|A|3156, 8OEQ|1|1|C|3171, 8OEQ|1|1|U|3172, 8OEQ|1|1|G|3174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_131 not in the Motif Atlas
- Homologous match to IL_8C3A_132
- Geometric discrepancy: 0.0423
- The information below is about IL_8C3A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|1|U|3149
8OEQ|1|1|A|3150
8OEQ|1|1|C|3151
8OEQ|1|1|G|3152
8OEQ|1|1|A|3153
8OEQ|1|1|A|3154
8OEQ|1|1|U|3155
8OEQ|1|1|A|3156
8OEQ|1|1|A|3157
8OEQ|1|1|G|3158
*
8OEQ|1|1|C|3169
8OEQ|1|1|G|3170
8OEQ|1|1|C|3171
8OEQ|1|1|U|3172
8OEQ|1|1|G|3173
8OEQ|1|1|G|3174
8OEQ|1|1|A|3175
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain AG
- 60S ribosomal protein L33-A
- Chain n
- 60S ribosomal protein L6
- Chain q
- 60S ribosomal protein L9-B
- Chain u
- 60S ribosomal protein L14-B
- Chain w
- Ribosomal protein L13
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