IL_8OEQ_219

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_219 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.068

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8OEQ|1|AS|U|1641
8OEQ|1|AS|G|1642
8OEQ|1|AS|A|1643
8OEQ|1|AS|A|1644
8OEQ|1|AS|U|1645
*
8OEQ|1|AS|A|1802
8OEQ|1|AS|G|1803
8OEQ|1|AS|G|1804
8OEQ|1|AS|A|1805
8OEQ|1|AS|A|1806

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain BU

60S ribosomal protein L27

Chain CB

60S ribosomal protein L34-B