IL_8OEQ_235
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAUGG*UGUUGACA
- Length
- 14 nucleotides
- Bulged bases
- 8OEQ|1|AS|U|2137, 8OEQ|1|AS|U|2153, 8OEQ|1|AS|C|2157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_235 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0428
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|AS|U|2134
8OEQ|1|AS|G|2135
8OEQ|1|AS|A|2136
8OEQ|1|AS|U|2137
8OEQ|1|AS|G|2138
8OEQ|1|AS|G|2139
*
8OEQ|1|AS|U|2151
8OEQ|1|AS|G|2152
8OEQ|1|AS|U|2153
8OEQ|1|AS|U|2154
8OEQ|1|AS|G|2155
8OEQ|1|AS|A|2156
8OEQ|1|AS|C|2157
8OEQ|1|AS|A|2158
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AW
- 60S ribosomal protein L2-B
- Chain CK
- 60S ribosomal protein L43-A
- Chain CM
- Small subunit ribosomal RNA; SSU rRNA
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