IL_8OEQ_272
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_272 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0657
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8OEQ|1|AS|C|2990
8OEQ|1|AS|U|2991
8OEQ|1|AS|U|2992
8OEQ|1|AS|A|2993
8OEQ|1|AS|G|2994
8OEQ|1|AS|U|2995
8OEQ|1|AS|A|2996
8OEQ|1|AS|C|2997
*
8OEQ|1|AS|G|3002
8OEQ|1|AS|G|3003
8OEQ|1|AS|A|3004
8OEQ|1|AS|A|3005
8OEQ|1|AS|C|3006
8OEQ|1|AS|C|3007
8OEQ|1|AS|G|3008
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AX
- 60S ribosomal protein L3
- Chain BD
- 60S ribosomal protein L9-B
- Chain BQ
- 60S ribosomal protein L23-A
- Chain CH
- 60S ribosomal protein L40-B
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