IL_8OEQ_273
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAUU*ACCA
- Length
- 9 nucleotides
- Bulged bases
- 8OEQ|1|AS|C|3064, 8OEQ|1|AS|C|3065
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_273 not in the Motif Atlas
- Homologous match to IL_8C3A_126
- Geometric discrepancy: 0.0428
- The information below is about IL_8C3A_126
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- Major groove minor groove platform with tHH
- Motif group
- IL_14592.1
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
8OEQ|1|AS|U|3019
8OEQ|1|AS|A|3020
8OEQ|1|AS|A|3021
8OEQ|1|AS|U|3022
8OEQ|1|AS|U|3023
*
8OEQ|1|AS|A|3063
8OEQ|1|AS|C|3064
8OEQ|1|AS|C|3065
8OEQ|1|AS|A|3066
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AX
- 60S ribosomal protein L3
- Chain BQ
- 60S ribosomal protein L23-A
- Chain BR
- 60S ribosomal protein L24-A
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