IL_8OEQ_274
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUUUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 8OEQ|1|AS|U|3028, 8OEQ|1|AS|U|3030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_274 not in the Motif Atlas
- Homologous match to IL_8C3A_127
- Geometric discrepancy: 0.0586
- The information below is about IL_8C3A_127
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- UAA/GAN related
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8OEQ|1|AS|U|3026
8OEQ|1|AS|U|3027
8OEQ|1|AS|U|3028
8OEQ|1|AS|U|3029
8OEQ|1|AS|U|3030
8OEQ|1|AS|G|3031
*
8OEQ|1|AS|C|3056
8OEQ|1|AS|G|3057
8OEQ|1|AS|A|3058
8OEQ|1|AS|A|3059
8OEQ|1|AS|G|3060
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AX
- 60S ribosomal protein L3
- Chain BR
- 60S ribosomal protein L24-A
- Chain BY
- 60S ribosomal protein L31-B
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