IL_8OEQ_291
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_291 not in the Motif Atlas
- Homologous match to IL_8C3A_144
- Geometric discrepancy: 0.0717
- The information below is about IL_8C3A_144
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_45841.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|AT|G|21
8OEQ|1|AT|A|22
8OEQ|1|AT|A|23
8OEQ|1|AT|A|24
8OEQ|1|AT|G|25
8OEQ|1|AT|C|26
8OEQ|1|AT|A|27
*
8OEQ|1|AT|U|53
8OEQ|1|AT|U|54
8OEQ|1|AT|A|55
8OEQ|1|AT|A|56
8OEQ|1|AT|G|57
8OEQ|1|AT|C|58
Current chains
- Chain AT
- 5S ribosomal RNA
Nearby chains
- Chain AZ
- Uncharacterized protein CaJ7.0206
- Chain BF
- 60S ribosomal protein L11-B
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