IL_8OEQ_342
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_342 not in the Motif Atlas
- Homologous match to IL_8C3A_441
- Geometric discrepancy: 0.0749
- The information below is about IL_8C3A_441
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22198.1
- Basepair signature
- cWW-tSH-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8OEQ|1|B|G|970
8OEQ|1|B|G|971
8OEQ|1|B|G|972
8OEQ|1|B|A|973
8OEQ|1|B|U|974
8OEQ|1|B|C|975
*
8OEQ|1|B|G|999
8OEQ|1|B|U|1000
8OEQ|1|B|C|1001
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 60S ribosomal protein L43-A
- Chain Q
- 40S ribosomal protein S14-A
- Chain c
- 40S ribosomal protein S26
- Chain j
- 60S ribosomal protein L2-B
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