IL_8OEQ_400
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8OEQ|1|CM|U|311, 8OEQ|1|CM|C|349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_400 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.037
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OEQ|1|CM|U|309
8OEQ|1|CM|A|310
8OEQ|1|CM|U|311
8OEQ|1|CM|C|312
8OEQ|1|CM|A|313
8OEQ|1|CM|A|314
*
8OEQ|1|CM|U|346
8OEQ|1|CM|U|347
8OEQ|1|CM|U|348
8OEQ|1|CM|C|349
8OEQ|1|CM|A|350
8OEQ|1|CM|A|351
8OEQ|1|CM|C|352
8OEQ|1|CM|G|353
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain CV
- 40S ribosomal protein S8
- Chain CY
- 40S ribosomal protein S11A
- Chain DK
- Ribosomal protein S23 (S12)
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