IL_8OEQ_430

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_430 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.0464

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8OEQ|1|CM|G|1096
8OEQ|1|CM|G|1097
8OEQ|1|CM|A|1098
8OEQ|1|CM|G|1099
8OEQ|1|CM|U|1100
8OEQ|1|CM|A|1101
8OEQ|1|CM|U|1102
8OEQ|1|CM|G|1103
*
8OEQ|1|CM|U|1114
8OEQ|1|CM|G|1115
8OEQ|1|CM|A|1116
8OEQ|1|CM|A|1117
8OEQ|1|CM|A|1118
8OEQ|1|CM|C|1119

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CI

60S ribosomal protein L41

Chain DK

Ribosomal protein S23 (S12)