IL_8OEQ_436
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUC*GUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_436 not in the Motif Atlas
- Homologous match to IL_8C3A_452
- Geometric discrepancy: 0.0662
- The information below is about IL_8C3A_452
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8OEQ|1|CM|G|1198
8OEQ|1|CM|U|1199
8OEQ|1|CM|C|1200
*
8OEQ|1|CM|G|1434
8OEQ|1|CM|U|1435
8OEQ|1|CM|U|1436
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain CX
- 40S ribosomal protein S10-A
- Chain DC
- 40S ribosomal protein S15
- Chain DQ
- 40S ribosomal protein S29A
- Chain DS
- Ubiquitin-40S ribosomal protein S31 fusion protein
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