IL_8OH6_051
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_051 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.0418
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
8OH6|1|1|U|1169
8OH6|1|1|G|1170
8OH6|1|1|C|1171
8OH6|1|1|C|1172
8OH6|1|1|G|1173
8OH6|1|1|G|1174
8OH6|1|1|A|1175
8OH6|1|1|A|1176
*
8OH6|1|1|U|1321
8OH6|1|1|A|1322
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain AG
- 60S ribosomal protein L33-A
- Chain o
- 60S ribosomal protein L7-A
- Chain w
- Ribosomal protein L13
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