IL_8OH6_056
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8OH6|1|1|A|1217
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_056 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.2416
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8OH6|1|1|U|1214
8OH6|1|1|C|1215
8OH6|1|1|U|1216
8OH6|1|1|A|1217
8OH6|1|1|G|1218
8OH6|1|1|A|1219
8OH6|1|1|C|1220
8OH6|1|1|A|1221
8OH6|1|1|G|1222
*
8OH6|1|1|C|1279
8OH6|1|1|C|1280
8OH6|1|1|G|1281
8OH6|1|1|A|1282
8OH6|1|1|A|1283
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain AN
- 60S ribosomal protein L40-B
Coloring options: