IL_8OH6_071

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_071 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.0421

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8OH6|1|1|U|1641
8OH6|1|1|G|1642
8OH6|1|1|A|1643
8OH6|1|1|A|1644
8OH6|1|1|U|1645
*
8OH6|1|1|A|1802
8OH6|1|1|G|1803
8OH6|1|1|G|1804
8OH6|1|1|A|1805
8OH6|1|1|A|1806

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain AA

60S ribosomal protein L27

Chain AH

60S ribosomal protein L34-B

Chain j

60S ribosomal protein L2-B