IL_8OH6_123
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CUUAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_123 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0384
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8OH6|1|1|C|2990
8OH6|1|1|U|2991
8OH6|1|1|U|2992
8OH6|1|1|A|2993
8OH6|1|1|G|2994
8OH6|1|1|U|2995
8OH6|1|1|A|2996
8OH6|1|1|C|2997
*
8OH6|1|1|G|3002
8OH6|1|1|G|3003
8OH6|1|1|A|3004
8OH6|1|1|A|3005
8OH6|1|1|C|3006
8OH6|1|1|C|3007
8OH6|1|1|G|3008
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 6
- 60S ribosomal protein L23-A
- Chain AN
- 60S ribosomal protein L40-B
- Chain k
- 60S ribosomal protein L3
- Chain q
- 60S ribosomal protein L9-B
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