IL_8OH6_188
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_188 not in the Motif Atlas
- Homologous match to IL_8C3A_041
- Geometric discrepancy: 0.0574
- The information below is about IL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OH6|1|AS|G|987
8OH6|1|AS|A|988
8OH6|1|AS|G|989
8OH6|1|AS|G|990
8OH6|1|AS|U|991
8OH6|1|AS|A|992
8OH6|1|AS|A|993
*
8OH6|1|AS|U|1048
8OH6|1|AS|A|1049
8OH6|1|AS|A|1050
8OH6|1|AS|A|1051
8OH6|1|AS|U|1052
8OH6|1|AS|A|1053
8OH6|1|AS|U|1054
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AT
- 5S ribosomal RNA; 5S rRNA
- Chain BB
- 60S ribosomal protein L7-A
- Chain BE
- 60S ribosomal protein L10
- Chain BO
- 60S ribosomal protein L21-A
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