IL_8OH6_215
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UCUUC*GGAAUA
- Length
- 11 nucleotides
- Bulged bases
- 8OH6|1|AS|U|1625, 8OH6|1|AS|U|1811
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_215 not in the Motif Atlas
- Homologous match to IL_8C3A_072
- Geometric discrepancy: 0.1508
- The information below is about IL_8C3A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48431.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OH6|1|AS|U|1623
8OH6|1|AS|C|1624
8OH6|1|AS|U|1625
8OH6|1|AS|U|1626
8OH6|1|AS|C|1627
*
8OH6|1|AS|G|1807
8OH6|1|AS|G|1808
8OH6|1|AS|A|1809
8OH6|1|AS|A|1810
8OH6|1|AS|U|1811
8OH6|1|AS|A|1812
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain BU
- 60S ribosomal protein L27
Coloring options: