IL_8OH6_223
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AAUAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_223 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.0705
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8OH6|1|AS|A|1879
8OH6|1|AS|A|1880
8OH6|1|AS|U|1881
8OH6|1|AS|A|1882
8OH6|1|AS|A|1883
8OH6|1|AS|U|1884
8OH6|1|AS|G|1885
*
8OH6|1|AS|C|2324
8OH6|1|AS|U|2325
8OH6|1|AS|A|2326
8OH6|1|AS|U|2327
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AX
- 60S ribosomal protein L3
- Chain BK
- Ribosomal protein L22
- Chain BY
- 60S ribosomal protein L31-B
Coloring options: