IL_8OH6_249
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_249 not in the Motif Atlas
- Homologous match to IL_8P9A_327
- Geometric discrepancy: 0.0987
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8OH6|1|AS|U|2690
8OH6|1|AS|U|2691
8OH6|1|AS|G|2692
8OH6|1|AS|A|2693
*
8OH6|1|AS|U|2707
8OH6|1|AS|A|2708
8OH6|1|AS|C|2709
8OH6|1|AS|A|2710
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AZ
- Uncharacterized protein CaJ7.0206
- Chain BL
- 60S ribosomal protein L18-A
- Chain BO
- 60S ribosomal protein L21-A
- Chain BW
- 60S ribosomal protein L29
- Chain CJ
- 60S ribosomal protein L42-B
Coloring options: