IL_8OH6_271
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGGA
- Length
- 17 nucleotides
- Bulged bases
- 8OH6|1|AS|A|3150, 8OH6|1|AS|A|3156, 8OH6|1|AS|C|3171, 8OH6|1|AS|U|3172, 8OH6|1|AS|G|3174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_271 not in the Motif Atlas
- Homologous match to IL_8C3A_132
- Geometric discrepancy: 0.065
- The information below is about IL_8C3A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8OH6|1|AS|U|3149
8OH6|1|AS|A|3150
8OH6|1|AS|C|3151
8OH6|1|AS|G|3152
8OH6|1|AS|A|3153
8OH6|1|AS|A|3154
8OH6|1|AS|U|3155
8OH6|1|AS|A|3156
8OH6|1|AS|A|3157
8OH6|1|AS|G|3158
*
8OH6|1|AS|C|3169
8OH6|1|AS|G|3170
8OH6|1|AS|C|3171
8OH6|1|AS|U|3172
8OH6|1|AS|G|3173
8OH6|1|AS|G|3174
8OH6|1|AS|A|3175
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain BA
- 60S ribosomal protein L6
- Chain BD
- 60S ribosomal protein L9-B
- Chain BH
- 60S ribosomal protein L14-B
- Chain BJ
- Ribosomal protein L13
- Chain BN
- 60S ribosomal protein L20
- Chain CA
- 60S ribosomal protein L33-A
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