IL_8OH6_277

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8OH6|1|AS|G|3342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_277 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.079

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8OH6|1|AS|G|3293
8OH6|1|AS|U|3294
8OH6|1|AS|A|3295
*
8OH6|1|AS|U|3338
8OH6|1|AS|U|3339
8OH6|1|AS|A|3340
8OH6|1|AS|A|3341
8OH6|1|AS|G|3342
8OH6|1|AS|C|3343

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BR

60S ribosomal protein L24-A

Chain BY

60S ribosomal protein L31-B