IL_8OH6_287
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 8OH6|1|AT|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_287 not in the Motif Atlas
- Homologous match to IL_8C3A_148
- Geometric discrepancy: 0.0501
- The information below is about IL_8C3A_148
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.9
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8OH6|1|AT|A|72
8OH6|1|AT|C|73
8OH6|1|AT|C|74
8OH6|1|AT|G|75
8OH6|1|AT|A|76
8OH6|1|AT|G|77
8OH6|1|AT|U|78
8OH6|1|AT|A|79
8OH6|1|AT|G|80
*
8OH6|1|AT|C|100
8OH6|1|AT|G|101
8OH6|1|AT|A|102
8OH6|1|AT|A|103
8OH6|1|AT|A|104
8OH6|1|AT|C|105
8OH6|1|AT|U|106
Current chains
- Chain AT
- 5S
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- 60S ribosomal protein L7-A
- Chain BE
- 60S ribosomal protein L10
- Chain BN
- 60S ribosomal protein L20
- Chain BO
- 60S ribosomal protein L21-A
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