IL_8OH6_309
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8OH6|1|B|U|311, 8OH6|1|B|C|349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_309 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.0483
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OH6|1|B|U|309
8OH6|1|B|A|310
8OH6|1|B|U|311
8OH6|1|B|C|312
8OH6|1|B|A|313
8OH6|1|B|A|314
*
8OH6|1|B|U|346
8OH6|1|B|U|347
8OH6|1|B|U|348
8OH6|1|B|C|349
8OH6|1|B|A|350
8OH6|1|B|A|351
8OH6|1|B|C|352
8OH6|1|B|G|353
Current chains
- Chain B
- 18S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 40S ribosomal protein S8
- Chain N
- 40S ribosomal protein S11A
- Chain Z
- Ribosomal protein S23 (S12)
Coloring options: