IL_8OH6_404
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8OH6|1|CM|A|577
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_404 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.1057
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OH6|1|CM|G|560
8OH6|1|CM|U|561
8OH6|1|CM|G|562
8OH6|1|CM|C|563
8OH6|1|CM|C|564
8OH6|1|CM|A|565
8OH6|1|CM|G|566
*
8OH6|1|CM|C|573
8OH6|1|CM|G|574
8OH6|1|CM|G|575
8OH6|1|CM|U|576
8OH6|1|CM|A|577
8OH6|1|CM|A|578
8OH6|1|CM|U|579
8OH6|1|CM|U|580
8OH6|1|CM|C|581
Current chains
- Chain CM
- 18S
Nearby chains
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
- Chain CQ
- Ribosomal protein S3
- Chain DK
- Ribosomal protein S23 (S12)
- Chain DR
- 40S ribosomal protein S30
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