IL_8OH6_422

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_422 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.0559

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8OH6|1|CM|G|1096
8OH6|1|CM|G|1097
8OH6|1|CM|A|1098
8OH6|1|CM|G|1099
8OH6|1|CM|U|1100
8OH6|1|CM|A|1101
8OH6|1|CM|U|1102
8OH6|1|CM|G|1103
*
8OH6|1|CM|U|1114
8OH6|1|CM|G|1115
8OH6|1|CM|A|1116
8OH6|1|CM|A|1117
8OH6|1|CM|A|1118
8OH6|1|CM|C|1119

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L41

Chain DK

Ribosomal protein S23 (S12)