IL_8OH6_425

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8OH6|1|CM|C|1143, 8OH6|1|CM|C|1144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_425 not in the Motif Atlas

Homologous match to IL_8C3A_449

Geometric discrepancy: 0.0564

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8OH6|1|CM|A|1142
8OH6|1|CM|C|1143
8OH6|1|CM|C|1144
8OH6|1|CM|A|1145
*
8OH6|1|CM|U|1604
8OH6|1|CM|C|1605
8OH6|1|CM|C|1606
8OH6|1|CM|C|1607
8OH6|1|CM|U|1608

Current chains

Chain CM

18S

Nearby chains

Chain CS

Ribosomal protein S7

Chain DD

40S ribosomal protein S16

Chain DP

40S ribosomal protein S28-B